SNPsea Manual¶
Github project: https://github.com/slowkow/snpsea
- Introduction
- Visual Summary
- Algorithm Details
- Installation
- Data
- Usage
- Output Visualizations
- Supplementary Figures
- Supplementary Figure 1: Determining SNP linkage intervals
- Supplementary Figure 2: Counting genes in GWAS SNP linkage intervals
- Supplementary Figure 3: Choosing the \(r^{2}\) threshold for linkage intervals
- Supplementary Figure 4: Each trait-associated locus harbors a single associated gene
- Supplementary Figure 5: Type 1 error estimates
- Supplementary Figure 6: Red blood cell count GO enrichment
- Supplementary Figure 7: Multiple sclerosis
- Supplementary Figure 8: Celiac disease
- Supplementary Figure 9: HDL cholesterol
- References